Gene ID: 844298, updated on 15-Oct-2023
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Summary
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- Gene symbol
- AT1G79600
- Gene description
- Protein kinase superfamily protein
- Primary source
- Araport:AT1G79600
- Locus tag
- AT1G79600
- See related
- TAIR:AT1G79600
- Gene type
- protein coding
- RefSeq status
- REVIEWED
- Organism
- Arabidopsis thaliana (ecotype: Columbia)
- Lineage
- Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
- Also known as
- ABC1-like kinase 3; ABC1K3; F20B17.3; F20B17_3
- Summary
- Encodes a chloroplast ABC1-like kinase that regulates vitamin E metabolism.
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Genomic context
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See AT1G79600 in Genome Data Viewer
- Location:
- chromosome: 1
- Exon count:
- 4
- Sequence:
- Chromosome: 1; NC_003070.9 (29949910..29952726, complement)
Chromosome 1 - NC_003070.9![AT1G79600 Protein kinase superfamily protein [Arabidopsis thaliana (thale cress)] - Gene (1)](https://i0.wp.com/www.ncbi.nlm.nih.gov/gutils/geneneighb.fcgi?geneid=844298&nuc_gi=240254421&n0=SMB&n1=SYP52&n2=AT1G79600&n3=NHX6&n4=AT1G79620 "AT1G79600 Protein kinase superfamily protein [Arabidopsis thaliana (thale cress)] - Gene (1)")
Genomic regions, transcripts, and products
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Go to reference sequence details
- Genomic Sequence:
- NC_003070.9
Go to nucleotide: Graphics FASTA GenBank
Bibliography
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Related articles in PubMed
- Arabidopsis Atypical Kinases ABC1K1 and ABC1K3 Act Oppositely to Cope with Photodamage Under Red Light. Huang H, et al. Mol Plant, 2015 Jul. PMID 25882344, Free PMC Article
- Loss of plastoglobule kinases ABC1K1 and ABC1K3 causes conditional degreening, modified prenyl-lipids, and recruitment of the jasmonic acid pathway. Lundquist PK, et al. Plant Cell, 2013 May. PMID 23673981, Free PMC Article
- A chloroplast ABC1-like kinase regulates vitamin E metabolism in Arabidopsis. Martinis J, et al. Plant Physiol, 2013 Jun. PMID 23632854, Free PMC Article
- The Plastoglobule-Localized Metallopeptidase PGM48 Is a Positive Regulator of Senescence in Arabidopsis thaliana. Bhuiyan NH, et al. Plant Cell, 2016 Dec. PMID 27895226, Free PMC Article
- Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles. Vidi PA, et al. J Biol Chem, 2006 Apr 21. PMID 16414959
See all (8) citations in PubMed
GeneRIFs: Gene References Into Functions
What's a GeneRIF?
- ABC1Ks (activity of bc1 complex kinases) are atypical protein kinases. The ABC1K gene family is evolutionarily conserved and has greatly expanded in photosynthetic organisms. ABC1K1 and ABC1K3 act oppositely to cope with photodamage under red light. [ABC1K3]
Title: Arabidopsis Atypical Kinases ABC1K1 and ABC1K3 Act Oppositely to Cope with Photodamage Under Red Light.
- Data indicate that the ABC1K1/ABC1K3 complex contributes to plastoglobules (PGs) function in prenyl-lipid metabolism, stress response, and thylakoid remodeling.
Title: Loss of plastoglobule kinases ABC1K1 and ABC1K3 causes conditional degreening, modified prenyl-lipids, and recruitment of the jasmonic acid pathway.
- ABC1K3 affects the accumulation of VTE1-dependent metabolites, alpha-tocopherol and plastochromanol, most likely via phosphorylation of VTE1.
Title: A chloroplast ABC1-like kinase regulates vitamin E metabolism in Arabidopsis.
Submit: New GeneRIF Correction
General gene information
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- NM_106608.4
- Supported by ESTs:
Gene Ontology Provided by TAIR
| Function | Evidence Code | Pubs |
|---|---|---|
| enables protein binding | IPI Inferred from Physical Interaction | PubMed |
| enables protein kinase activity | IDA Inferred from Direct Assay | PubMed |
| enables protein serine/threonine kinase activity | IEA Inferred from Electronic Annotation |
| Process | Evidence Code | Pubs |
|---|---|---|
| involved_in cellular response to nitrogen starvation | IMP Inferred from Mutant Phenotype | PubMed |
| involved_in chloroplast organization | IMP Inferred from Mutant Phenotype | PubMed |
| involved_in plastoglobule organization | IMP Inferred from Mutant Phenotype | PubMed |
| acts_upstream_of_or_within protein stabilization | IMP Inferred from Mutant Phenotype | PubMed |
| acts_upstream_of_or_within regulation of vitamin E biosynthetic process | IMP Inferred from Mutant Phenotype | PubMed |
| involved_in response to high light intensity | IMP Inferred from Mutant Phenotype | PubMed |
| involved_in response to photooxidative stress | IMP Inferred from Mutant Phenotype | PubMed |
| involved_in response to red light | IMP Inferred from Mutant Phenotype | PubMed |
| involved_in response to water deprivation | IMP Inferred from Mutant Phenotype | PubMed |
| Component | Evidence Code | Pubs |
|---|---|---|
| located_in chloroplast | HDA | PubMed |
| located_in chloroplast | IDA Inferred from Direct Assay | PubMed |
| located_in mitochondrion | HDA | PubMed |
| located_in plastoglobule | HDA | PubMed |
| located_in plastoglobule | IDA Inferred from Direct Assay | PubMed |
General protein information
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- Preferred Names
- Protein kinase superfamily protein
- NP_565214.1
-
- Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, catalytic domain (InterPro:IPR000719), Aminoglycoside phosphotransferase (InterPro:IPR002575), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G71810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NCBI Reference Sequences (RefSeq)
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Genome Annotation
The following sections contain reference sequences that belong to a specific genome build. Explain
Reference assembly
Genomic
-
NC_003070.9Reference assembly
- Range
- 29949910..29952726 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_106608.4 → NP_565214.1 Protein kinase superfamily protein [Arabidopsis thaliana]
See identical proteins and their annotated locations for NP_565214.1
Status: REVIEWED
- UniProtKB/Swiss-Prot
- Q94BV0, Q9MA15
- UniProtKB/TrEMBL
- A0A097PQG1, A0A178WNJ7, A0A5S9WVT1
- Conserved Domains (1) summary
-
- COG0661
Location:101 → 606 - AarF; Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family [Coenzyme transport and metabolism, Signal transduction mechanisms]
- COG0661
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| Nucleotide | Protein | |
|---|---|---|
| Heading | Accession and Version | |
| Protein Accession | Links | |
|---|---|---|
| GenPept Link | UniProtKB Link | |
| Q9MA15.1 | ||
Additional links
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Gene LinkOut
The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.
- Bio-Analytic Resource
- BioGPS
- Eukaryotic Promoter Database
- Kyoto Encyclopedia of Genes and Genomes
- OMA Browser: Orthologous MAtrix
- OrthoDB catalog of orthologs
- PANTHER Classification System
- Addgene Non-profit plasmid repository
- GenScript latest version of gene cDNA ORF Clone
![AT1G79600 Protein kinase superfamily protein [Arabidopsis thaliana (thale cress)] - Gene (2024)](data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAEAAAABCAQAAAC1HAwCAAAAC0lEQVR42mP8/h8AAvMB+NzmkbcAAAAASUVORK5CYII=)